Healthy Pumpkin Cheesecake Cookies Recipe
Introduction
These Healthy Pumpkin Cheesecake Cookies combine the warm flavors of pumpkin and spice with a creamy cheesecake center for a delightful treat. They offer a protein boost while remaining deliciously soft and satisfying. Perfect for fall or any time you want a wholesome dessert.

Ingredients
- 45g (1.5 scoops) Pumpkin Pie Protein Powder
- 56g Almond Flour
- 28g Brown Sugar Substitute
- 1/2 tsp Baking Soda
- 1/2 tsp Cinnamon or Pumpkin Spice (up to 1 tsp for stronger flavor)
- 75g Canned Pumpkin (or pumpkin purée)
- 28g (2 Tbsp) Melted Butter or Coconut Oil
- 70g Fat Free or Reduced Fat Cream Cheese
- 15g (1/2 scoop) Vanilla Whey/Casein Blend Protein Powder
- 1 tsp Vanilla Extract
- 20g Powdered Sugar Substitute
Instructions
- Step 1: In a large bowl, mix all the dry ingredients for the pumpkin cookies.
- Step 2: Microwave the butter or coconut oil until melted, then add it and the canned pumpkin to the dry ingredients. Stir until cookie dough forms.
- Step 3: Refrigerate the cookie dough for at least 20 minutes, ideally one hour. This chilling improves texture and flavor.
- Step 4: In a small bowl, combine the cream cheese, vanilla protein powder, powdered sugar substitute, and vanilla extract. Mix until smooth and chill it alongside the dough.
- Step 5: Preheat the oven to 350°F (175°C) once the dough and filling are chilled.
- Step 6: Using a small cookie scoop or spoon, portion 12 small dough balls onto a parchment-lined baking sheet.
- Step 7: Press each dough ball down into a disc. Place a small amount of cheesecake filling in the center of 6 discs, leaving edges clear to seal.
- Step 8: Top the filled discs with the remaining 6 dough pieces, pinching edges to seal and forming each into a ball. Patch any cracks to keep the filling inside.
- Step 9: Bake at 350°F for 8–10 minutes. The cookies are safe to eat with a slightly underbaked center for softer, gooier cookies.
- Step 10: Remove cookies from the oven and let cool for one hour to allow the cheesecake filling to firm up. Optionally, chill in the fridge for a fully set center.
Tips & Variations
- For a stronger pumpkin spice flavor, increase the cinnamon or pumpkin spice to 1 teaspoon.
- Substitute coconut oil for butter to keep these cookies dairy-free, except for the cream cheese filling.
- If you don’t have a cookie scoop, a small kitchen spoon works well for portioning dough.
- Use your preferred brands of protein powder, but note that flavor and texture might slightly vary.
Storage
Store these cookies in an airtight container in the refrigerator for up to one week. They can also be frozen for longer storage. To enjoy, thaw overnight in the fridge and consume within a couple of days. Reheat slightly if desired, but they are delicious served cold as well.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I use fresh pumpkin instead of canned?
Yes, you can use fresh pumpkin purée, but be sure it’s well-cooked and strained to remove excess moisture for the best texture.
Are these cookies gluten-free?
Yes, this recipe uses almond flour and protein powders which are typically gluten-free, but always check your ingredient labels to ensure no gluten contamination.
PrintHealthy Pumpkin Cheesecake Cookies Recipe
These Healthy Pumpkin Cheesecake Cookies combine the warm flavors of pumpkin spice with a creamy protein-packed cheesecake filling. Made with almond flour and pumpkin pie protein powder, these cookies are a nutritious treat perfect for autumn or any time you crave a guilt-free dessert.
- Prep Time: 15 minutes
- Cook Time: 10 minutes
- Total Time: 1 hour 25 minutes
- Yield: 12 stuffed cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Low Fat
Ingredients
Dry Ingredients
- 45g (1.5 scoops) Pumpkin Pie Protein Powder
- 56g Almond Flour
- 28g Brown Sugar Substitute
- 1/2 tsp Baking Soda
- 1/2 tsp Cinnamon or Pumpkin Spice (up to 1 tsp for stronger flavor)
Wet Ingredients
- 75g Canned Pumpkin (or pumpkin purée)
- 28g (2 Tbsp) Melted Butter (or Coconut Oil)
Cheesecake Filling
- 70g Fat Free or Reduced Fat Cream Cheese
- 15g (1/2 scoop) Vanilla Whey/Casein Blend Protein Powder
- 20g Powdered Sugar Substitute
- 1 tsp Vanilla Extract
Instructions
- Mix Dry Ingredients: Combine the pumpkin pie protein powder, almond flour, brown sugar substitute, baking soda, and cinnamon or pumpkin spice in a large bowl, mixing thoroughly to ensure all dry ingredients are evenly incorporated.
- Add Wet Ingredients: Melt the butter or coconut oil using a microwave, then mix it into the dry ingredients along with the canned pumpkin until a cookie dough forms. The dough should be slightly sticky but hold together well.
- Chill the Dough: Refrigerate the cookie dough for one hour to improve texture and flavor. If pressed for time, chilling for at least 20 minutes is sufficient.
- Prepare Cheesecake Filling: In a separate small bowl, blend the cream cheese, vanilla whey/casein protein powder, powdered sugar substitute, and vanilla extract until smooth. Store this mixture in the fridge to chill and thicken alongside the dough.
- Preheat Oven: Once both dough and filling have chilled, preheat your oven to 350°F (175°C).
- Scoop Cookies: Use a small cookie scoop to portion out 12 small dough balls onto a parchment paper-lined baking sheet. If you don’t have a scoop, a small kitchen spoon works well.
- Flatten and Fill: Using your fingers, gently press each dough ball into a disc shape. Place a small spoonful of cheesecake filling in the center of 6 cookies, leaving enough space around the edge to seal.
- Form Stuffed Cookies: Place the remaining 6 dough discs over the filled ones, pinching the edges together to seal the cheesecake inside. Roll the stuffed cookies gently into balls, repairing any cracks to prevent filling leakage during baking.
- Bake: Bake the cookies at 350°F for 8-10 minutes. They are safe to eat with less baking if you prefer a soft, gooey texture.
- Cool: Remove the cookies from the oven and allow them to cool on the baking sheet for about one hour so the cheesecake filling can firm up. Alternatively, after cooling 5-10 minutes, place them in the fridge for one hour to set fully.
- Storage: Store cookies in the fridge for up to one week or freeze for longer storage, enjoying them chilled or at room temperature.
Notes
- Make sure to refrigerate the dough and filling to achieve the best texture and flavor in the cookies.
- You can substitute butter with coconut oil for a dairy-free option.
- Using a protein powder designed for baking or designed as pumpkin pie flavor enhances taste and nutritional profile.
- The cookies can be slightly underbaked for a softer center since all ingredients are safe to eat raw.
- If you don’t have pumpkin pie protein powder, you can use plain protein powder and increase the pumpkin pie spice for flavor.
- Keep the edges sealed well to prevent the cheesecake filling from leaking out while baking.
Keywords: pumpkin cheesecake cookies, healthy cookies, protein cookies, low fat dessert, pumpkin spice dessert, almond flour cookies, protein cheesecake filling

